The markers based on the candidate genes were named as follows: Br , Arabidopsis gene name, genome locus, ordered primer code. For establishing a genome-wide significance threshold for the QTL analyses, a permutation test was done with 1, iterations; however, a fixed LOD threshold of 3. Plant Mol Biol The selected candidate genes were calculated into three conditionally independent phenotypic structures. For ease of description, we numbered these clusters from block A through block G. A, Subnetwork 1 was constructed based on plant architecture traits, LC , and Ft.
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Protein composition of oil bodies from mature Brassica napus seeds.
Of all 96, probes on the microarray, 96 probes represented 41 Arabidopsis leaf development genes corresponding to 64 B. Adaptive Computation and Machine Learning. Coexpression correlation among all probes and phenotypic traits. The genes are arranged in nine functional pathways as shown by different node colors. Additionally, we applied a Bayesian network to evaluate subnetworks of the expression and phenotypic QTL data traits from the DH68 population. Author information Article notes Copyright and License information Disclaimer. The 41, protein-coding genes in the B. Network visualizing the correlation between leaf morphological traits and B. Total percentage of phenotypic variance explained by the additive effects of all detected pQTLs for each trait in B.
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S4, T and U. The color bars on the left and on the top indicate the 10 linkage groups. Received Aug 22; Accepted Jan 1. S5 ; Supplemental Table S Genomic analysis led to the identification of sequences coding for major seed oil body proteins, including 19 oleosins, 5 steroleosins and 9 caleosins. Curr Opin Plant Biol 7: Bayesian network analysis identified PC algorithm with significance level of 0.
Description:A large number of genetic markers based on Arabidopsis leaf development genes hereafter, leaf genes were mapped in silico, and a subset was genetically mapped in the DH population, which allowed us to address whether leaf genes are preferentially retained in the B. The fact that paralogs colocalized with pQTLs for the same traits suggests that they maintained similar functions after genome triplication, while the other 13 subsets of paralogs may have diverged. Br , Arabidopsis gene name, genome locus, ordered primer code. Bayesian network for 17 phenotypic leaf traits of B. Subnetwork 1 included phenotypic traits related to plant architecture, LC , and Ft plus 43 genes Fig. Bayesian network analysis identified PC algorithm with significance level of 0.
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